DreEX0053727 @ danRer10
Exon Skipping
Gene
ENSDARG00000070818 | pax7b
Description
paired box 7b [Source:ZFIN;Acc:ZDB-GENE-080917-54]
Coordinates
chr23:20976069-21012544:+
Coord C1 exon
chr23:20976069-20976265
Coord A exon
chr23:21004479-21004728
Coord C2 exon
chr23:21009530-21012544
Length
250 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTCTACCCTCCAGGTG
3' ss Score
11.42
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ACGTCAGTGGCACTGTGCACCGACCTCAGCCTTTGCCCCCCTCTACCATGCATCAGGGCGGGCTCTCGAGCGACAGTAGCTCCGCCTACGGCCTTTCGTCCAATCGACACAGTTTCTCCAGCTACACCGACACCTTCATGAGCCAATCAGCGTCCAGCAATCACATGAACCCTGTGAGCAATGGACTCTCTCCGCAG
Seq A exon
GTGATGAGCATCCTGAGCAACCCAAGCGCGGTGGCTCCTCAGCCCCAGCATGAGTTCTCCATCTCCCCCCTGCACAGCAGCCTAGAGGCCTCAAACCCCATCTCTGCCAGCTGCAGCCAGCGCTCCGAGCCCATAAAGACTGCTGACAGCCTGCCCTCCTCCCAATCCTACTGCCCCCCTACATACAGCACCACCAGCTACAGCGTGGACCCTGTCACTGCGGGATACCAGTATAGTCAGTACGGCCAGA
Seq C2 exon
CTGCGGTGGATTACCTGGCAAAGAATGTGAGCTTGTCCACGCAGAGAAGGATGAAGCTGGGAGAGCACTCGGCTGTGCTCGGACTTCTACAGGTGGAGACGGGACAGGCGTATTGATGGATCTCGAACTGAACATCCACCCGTGCGTTTCACCAGCATCCCTCCATTCTTTCTGCAGTGCCCACATGTGGCCCATCTGATGAAGAGTGAACAAGACCAAAAGAAGCTAGAAAAATCACGGGCAGTCTTAGACTTTCTACCTATAGCAGCGTGAATACAAAAGCCATTCCACATTAAAAACAGACACTATTGTGCTGCATCTCCTTTCTCATCCCGATCCTCTCTCTTTCACAACAAAGAGCCCCTTTCAGGGCTTCATATAGAAGCTGAGGGAAAACGAGCATCAATTGTCTGAGCTCAAATCACTAAAGCCCTGCCCGTCGGCATACAATGTTTAGCACACATCGACTATATCCGATTGCCCATTCCAAATGGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070818-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.577 C2=0.132
Domain overlap (PFAM):
C1:
PF123603=Pax7=WD(100=68.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGGCCTTTCGTCCAATC
R:
GGGCACTGCAGAAAGAATGGA
Band lengths:
295-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]