HsaEX6028823 @ hg19
Exon Skipping
Gene
ENSG00000009709 | PAX7
Description
paired box 7 [Source:HGNC Symbol;Acc:8621]
Coordinates
chr1:19029588-19075360:+
Coord C1 exon
chr1:19029588-19029790
Coord A exon
chr1:19062126-19062372
Coord C2 exon
chr1:19071308-19075360
Length
247 bp
Sequences
Splice sites
3' ss Seq
TAATGGCCTTTTCCCCACAGGTG
3' ss Score
10.88
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATGGGGGCAGCACTGTGCACCGGCCTCAGCCCCTGCCACCGTCCACCATGCACCAGGGCGGGCTGGCTGCAGCGGCTGCAGCCGCCGACACCAGCTCTGCCTACGGAGCCCGCCACAGCTTCTCCAGCTACTCTGACAGCTTCATGAATCCGGCGGCGCCCTCCAACCACATGAACCCGGTCAGCAACGGCCTGTCTCCTCAG
Seq A exon
GTGATGAGCATCTTGGGCAACCCCAGTGCGGTGCCCCCGCAGCCACAGGCTGACTTCTCCATCTCCCCGCTGCATGGCGGCCTGGACTCGGCCACCTCCATCTCAGCCAGCTGCAGCCAGCGGGCCGACTCCATCAAGCCAGGAGACAGCCTGCCCACCTCCCAGGCCTACTGCCCACCCACCTACAGCACCACCGGCTACAGCGTGGACCCCGTGGCCGGCTATCAGTACGGCCAGTACGGCCAGA
Seq C2 exon
CTGCTGTTGATTATCTGGCCAAAAATGTGAGCCTCTCCACCCAGCGTCGCATGAAGCTCGGGGAGCACTCTGCTGTGCTGGGACTCCTGCCTGTGGAAACTGGCCAGGCCTACTAGGGCCCCTGGGGCGACTTGCCCCAGCCCAATTCCCAGCCCAACCCTAACTGACCCCTGAGCTTCCCAGCCTTGCCGCCTCACCCCCCTGTTGTCCTAGGAGGCCAGGAAAGGAGCCCACCTGCTTCTCATCACCAGCCCCCTGGAGGTAGACAGCCAGCTTGTCACTCACCTGTGGTTAGGGATCCAGAGTGATGCCCTTGGAGTCTGCTCCCCACTTTCCCCAAGGAGGGTTTCTGGTCAGCCTGAGGTCCTCCCCTGTCAAATCCCATGGTGGCCTCTGTGCCATCTCAGGCATGGAGATTGGGGCCCACCTTGAACACCTTGGGTGTCCAGAGGAGGATGGTGCCTGAGAGGAGGTCCTACAGCCCTTTGGACCCAACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000009709-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.800 C2=0.763
Domain overlap (PFAM):
C1:
PF123603=Pax7=WD(100=61.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGCTTCATGAATCCGGC
R:
CTCCTTTCCTGGCCTCCTAGG
Band lengths:
299-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)