GgaEX6024128 @ galGal4
Exon Skipping
Gene
ENSGALG00000003782 | Pax-7
Description
paired box protein Pax-7 [Source:RefSeq peptide;Acc:NP_990396]
Coordinates
chr21:4518762-4530774:+
Coord C1 exon
chr21:4518762-4518827
Coord A exon
chr21:4525059-4525305
Coord C2 exon
chr21:4528168-4530774
Length
247 bp
Sequences
Splice sites
3' ss Seq
TGCCTCCTGTGCTTCCCCAGGTG
3' ss Score
11.83
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAGCAGGGTGCCCAAAACAAGATGCAGTGCTCCAGGTGGAACCTCACCATAGCCTTGAACAATCAG
Seq A exon
GTGATGAGCATCCTGAGCAACCCCAGCGGGGTTCCTCCGCAGCCCCAGGCTGACTTCTCCATCTCTCCTCTTCACGGTGGCCTGGACACCACCAACTCCATCTCTGCCAGCTGCAGCCAGCGGAGTGACTCCATCAAGTCCGTGGACAGCCTCCCGACCTCGCAGTCCTACTGTCCTCCCACCTACAGCACCACCAGTTACAGCGTGGACCCGGTGGCCGGCTACCAGTATGGGCAGTATGGACAAA
Seq C2 exon
CTGCTGTTGATTATTTGACCAAGAACGTGAGCCTGTCCACGCAGCGCAGGATGAAGCTGGGAGAACATTCGGCCGTTCTGGGGCTCCTACCAGTAGAGACAGGCCAAGCTTACTGAAGAGTCCGACTGTGCCAACAACCCACTCCAGCAACTTGGTACCACTGGAGAAACACTACCAGCCTTCCAGGGATCTGCCTGTACCCAGACCCTACTCCTTCCCAACTCCCTTCCACCTCGCATCAACTTGTGAAGGAGACGGGAAAGATGGGGAGGGCTCTCCAAGAATCCAGCTCCTCCCAGGGCGCTCAGAGGCAAGCCTGGCCTCATTGACCTGAATTCTGTGGCCAGAGACAATAGGTTGGGTACATTTATTAACCCCGAGTTCATGCCCTCCCTCTACCTGGCCATGGTGTTCTGCCCATGCTTAAGGACCTTCCATTGATCTAGGTAGTTGGCATAGTCAAAGCCAAATTGATCTTTTTTTCTTTTCCTTTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003782-'11-14,'11-13,12-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=1.000 C2=0.237
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGATGCAGTGCTCCAGG
R:
CACAAGTTGATGCGAGGTGGA
Band lengths:
299-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]