MmuEX6097360 @ mm9

Exon Skipping

Gene

ENSMUSG00000028736 | Pax7

Description

paired box gene 7 [Source:MGI Symbol;Acc:MGI:97491]

Coordinates

chr4:139292977-139335693:-

Coord C1 exon

chr4:139335491-139335693

Coord A exon

chr4:139304847-139305093

Coord C2 exon

chr4:139292977-139296817

Length

247 bp

Sequences

Splice sites

3' ss Seq

ATTGCCTATCTCTCCTGCAGGTC

3' ss Score

12.48

5' ss Seq

AAAGTGAGT

5' ss Score

8.4

Exon sequences

Seq C1 exon

ATGGAGGCAGCACAGTACACAGGCCCCAGCCCCTTCCGCCATCAACCATGCATCAGGGTGGGCTGGCTGCGGCCGCTGCAGCAGCGGACACCAGCTCTGCCTACGGAGCCCGCCACAGCTTCTCCAGCTACTCTGACAGCTTCATGAACCCTGGGGCTCCCTCCAACCACATGAACCCTGTCAGCAATGGCCTGTCTCCTCAG

Seq A exon

GTCATGAGCATCCTTAGCAACCCGAGTGCCGTGCCTCCACAGCCCCAGGCCGACTTCTCCATCTCCCCGCTGCATGGAGGCCTGGACTCGGCTTCCTCCATCTCAGCCAGCTGCAGCCAACGGGCCGACTCCATCAAGCCAGGAGACAGCTTGCCCACGTCCCAGTCTTACTGCCCACCCACCTACAGCACCACTGGCTACAGTGTGGACCCTGTGGCTGGCTACCAGTACAGCCAGTATGGCCAAA

Seq C2 exon

CTGCTGTTGATTACCTGGCCAAAAACGTGAGCCTGTCCACACAGCGCCGTATGAAGCTTGGGGAACACTCCGCTGTGCTGGGACTTCTTCCTGTGGAAACGGGACAAGCCTACTAGGGTCCCTGGGGCAACTTGCCCCATCCAGTGGCCCAGCCAACCCTTCCCAAGCCCTGAGTCTCCTCACCTCAGTCCCCTTATCCCCCTGGGGTTGCAGGAGACCAAGGGAAAAAAACCCTTTCCCTTCCTACAGGAAACCCTCTGGAGACGGAAAACCAGTGTGCCATCTACCCATGCTTAGTGACCCAGAGTGGCCCCTTGCCTTCCCCTCTTTCTTCAGAGGGGTTCCTAGGCATCCTGCAGTGACCTCCAGCTCACATCCACCTTCTCTGTATCGTGGCCTCGGTCCTGTCTCAGTGCAGAGATTGAGGCTCAATTTGAACCAAGCACCTAGTTATCAGAAGAAAATGGTGCCAAAGACAAGGCCCTGGAGTCCTTGACCTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000028736-'6-7,'6-6,7-7=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available

Features