MmuEX6097360 @ mm10
Exon Skipping
Gene
ENSMUSG00000028736 | Pax7
Description
paired box 7 [Source:MGI Symbol;Acc:MGI:97491]
Coordinates
chr4:139737062-139779778:-
Coord C1 exon
chr4:139779576-139779778
Coord A exon
chr4:139748932-139749178
Coord C2 exon
chr4:139737062-139740902
Length
247 bp
Sequences
Splice sites
3' ss Seq
ATTGCCTATCTCTCCTGCAGGTC
3' ss Score
12.48
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGGAGGCAGCACAGTACACAGGCCCCAGCCCCTTCCGCCATCAACCATGCATCAGGGTGGGCTGGCTGCGGCCGCTGCAGCAGCGGACACCAGCTCTGCCTACGGAGCCCGCCACAGCTTCTCCAGCTACTCTGACAGCTTCATGAACCCTGGGGCTCCCTCCAACCACATGAACCCTGTCAGCAATGGCCTGTCTCCTCAG
Seq A exon
GTCATGAGCATCCTTAGCAACCCGAGTGCCGTGCCTCCACAGCCCCAGGCCGACTTCTCCATCTCCCCGCTGCATGGAGGCCTGGACTCGGCTTCCTCCATCTCAGCCAGCTGCAGCCAACGGGCCGACTCCATCAAGCCAGGAGACAGCTTGCCCACGTCCCAGTCTTACTGCCCACCCACCTACAGCACCACTGGCTACAGTGTGGACCCTGTGGCTGGCTACCAGTACAGCCAGTATGGCCAAA
Seq C2 exon
CTGCTGTTGATTACCTGGCCAAAAACGTGAGCCTGTCCACACAGCGCCGTATGAAGCTTGGGGAACACTCCGCTGTGCTGGGACTTCTTCCTGTGGAAACGGGACAAGCCTACTAGGGTCCCTGGGGCAACTTGCCCCATCCAGTGGCCCAGCCAACCCTTCCCAAGCCCTGAGTCTCCTCACCTCAGTCCCCTTATCCCCCTGGGGTTGCAGGAGACCAAGGGAAAAAAACCCTTTCCCTTCCTACAGGAAACCCTCTGGAGACGGAAAACCAGTGTGCCATCTACCCATGCTTAGTGACCCAGAGTGGCCCCTTGCCTTCCCCTCTTTCTTCAGAGGGGTTCCTAGGCATCCTGCAGTGACCTCCAGCTCACATCCACCTTCTCTGTATCGTGGCCTCGGTCCTGTCTCAGTGCAGAGATTGAGGCTCAATTTGAACCAAGCACCTAGTTATCAGAAGAAAATGGTGCCAAAGACAAGGCCCTGGAGTCCTTGACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028736-'8-11,'8-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.250
Domain overlap (PFAM):
C1:
PF123603=Pax7=WD(100=61.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTTCATGAACCCTGGG
R:
TTTCCCTTGGTCTCCTGCAAC
Band lengths:
296-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types