BtaEX6013406 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014967 | PAX7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKL5]
Coordinates
chr2:134512629-134551233:-
Coord C1 exon
chr2:134551031-134551233
Coord A exon
chr2:134519555-134519801
Coord C2 exon
chr2:134512629-134512744
Length
247 bp
Sequences
Splice sites
3' ss Seq
CTGACACTCTCCCCCCGCAGGTG
3' ss Score
13.06
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ACGGGGGCAGCACCGTGCACCGACCCCAGCCGCTCCCGCCGTCCACCATGCACCAGGGGGGCCTGGCCGCGGCGGCCGCAGCCGCGGACACCAGCTCTGCCTACGGAGCCCGCCACGGCTTCTCCAGCTACTCCGACAGCTTCATGAACCCGGCGGCCGCCTCCAATCACATGAACCCCGTCAGCAACGGCCTGTCGCCTCAG
Seq A exon
GTGATGAGCATTCTGAGCAACCCCAGCGCGGTGCCGCCGCAGCCCCAGGCCGACTTCTCCATCTCGCCGCTGCACGGCGGCCTGGACTCCGCCACCTCCATCTCGGCCAGCTGCAGCCAGCGGGCGGACCCCATCAAGCCGGGAGACAGCCTGCCCACCTCGCAGTCGTACTGTCCGCCCACCTACAGCACCACCGGCTACAGCGTGGACCCCGTGGCTGGCTACCAGTACGGCCAGTACGGCCAGA
Seq C2 exon
CTGCTGTTGATTACCTGGCCAAAAATGTGAGCCTGTCCACACAGCGTCGCATGAAGCTCGGGGAGCACTCGGCTGTGCTGGGACTCCTGCCTGTGGAAACTGGCCAAGCTTACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014967-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.368
Domain overlap (PFAM):
C1:
PF123603=Pax7=WD(100=61.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCGCCGTCCACCATG
R:
AGTAAGCTTGGCCAGTTTCCAC
Band lengths:
285-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]