RnoEX0070795 @ rn6
Exon Skipping
Gene
ENSRNOG00000020782 | Pspc1
Description
paraspeckle component 1 [Source:RGD Symbol;Acc:1310122]
Coordinates
chr15:37011829-37015530:-
Coord C1 exon
chr15:37015435-37015530
Coord A exon
chr15:37013889-37014080
Coord C2 exon
chr15:37011829-37011913
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTAATGTTAATACAGGGA
3' ss Score
4.48
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
Exon sequences
Seq C1 exon
AACACCTCGTCCAGTCATTGTAGAACCCATGGAGCAGTTTGATGATGAAGATGGTTTGCCAGAGAAGCTAATGCAGAAAACTCAACAGTACCATAA
Seq A exon
GGAAAGAGAACAGCCACCACGGTTTGCTCAACCTGGGACATTTGAATTTGAATATGCATCTCGATGGAAGGCTCTGGATGAAATGGAGAAGCAGCAGCGTGAACAAGTTGATAGAAACATCAGAGAAGCCAAGGAGAAACTGGAGGCAGAGATGGAAGCCGCTAGACATGAACACCAGTTAATGCTAATGAG
Seq C2 exon
ATCTAATGAGACGTCAAGAAGAACTCAGACGCTTGGAAGAACTCAGAAATCAAGAACTGCAGAAACGAAAGCAAATACAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020782-'7-8,'7-7,8-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=0.776 C2=0.966
Domain overlap (PFAM):
C1:
PF080756=NOPS=PU(53.8=84.8)
A:
PF080756=NOPS=PD(44.2=34.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTCGTCCAGTCATTGT
R:
AGTTGTATTTGCTTTCGTTTCTGCA
Band lengths:
178-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]