BtaEX6056667 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003934 | PSPC1
Description
Bos taurus paraspeckle component 1 (PSPC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075277]
Coordinates
chr12:36542526-36551643:+
Coord C1 exon
chr12:36542526-36542621
Coord A exon
chr12:36546768-36546964
Coord C2 exon
chr12:36551559-36551643
Length
197 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCATGTAAACTTAGGGA
3' ss Score
5.6
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GACCCCTCGTCCGGTCATTGTGGAGCCCATGGAACAGTTTGATGATGAAGATGGTTTGCCAGAGAAACTAATGCAGAAAACTCAGCAGTATCATAA
Seq A exon
GGAAAGAGAACAGCCACCACGTTTTGCTCAGCCTGGGACATTTGAATTTGAGTATGCATCTCGATGGAAGGCTCTGGATGAAATGGAGAAGCAGCAGCGCGAGCAGGTTGACAGAAACATCCGAGAAGCCAAAGAGAAACTGGAGGCGGAGATGGAAGCGGCCCGGCACGAGCACCAGCTGATGCTCATGCGGCAAG
Seq C2 exon
ATTTAATGAGGCGTCAAGAGGAACTCAGACGTTTGGAAGAACTCAGAAATCAAGAGCTACAAAAACGAAAGCAAATACAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003934-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=0.776 C2=0.966
Domain overlap (PFAM):
C1:
PF080756=NOPS=PU(53.8=84.8)
A:
PF080756=NOPS=PD(44.2=34.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCTCGTCCGGTCATT
R:
CTCAGCTGTATTTGCTTTCGTT
Band lengths:
181-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]