MmuEX6041784 @ mm10
Exon Skipping
Gene
ENSMUSG00000021938 | Pspc1
Description
paraspeckle protein 1 [Source:MGI Symbol;Acc:MGI:1913895]
Coordinates
chr14:56758630-56764244:-
Coord C1 exon
chr14:56764149-56764244
Coord A exon
chr14:56761834-56762030
Coord C2 exon
chr14:56758630-56758714
Length
197 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTAATGTTAATACAGGGA
3' ss Score
4.48
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AACACCTCGTCCAGTCATTGTAGAACCCATGGAGCAGTTTGATGATGAAGATGGTTTACCAGAGAAGCTAATGCAGAAAACTCAACAGTACCATAA
Seq A exon
GGAAAGAGAACAGCCACCACGGTTTGCTCAACCTGGGACATTTGAATTTGAATATGCGTCTCGATGGAAGGCTCTTGATGAAATGGAAAAGCAGCAGCGGGAACAAGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGAGGCAGAGATGGAAGCAGCTAGACATGAACACCAGTTAATGCTAATGAGGCAAG
Seq C2 exon
ATCTAATGAGACGTCAAGAAGAACTCAGACGTTTGGAAGAACTCAGAAATCAAGAACTGCAGAAACGAAAGCAAATACAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021938_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=0.677 C2=0.655
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(16.3=53.3)
A:
PF080756=NOPS=PD(44.2=34.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTCGTCCAGTCATTGT
R:
AGTTGTATTTGCTTTCGTTTCTGCA
Band lengths:
178-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types