GgaEX1046743 @ galGal4
Exon Skipping
Gene
ENSGALG00000017142 | PSPC1
Description
Paraspeckle component 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZK88]
Coordinates
chr1:178409266-178415285:+
Coord C1 exon
chr1:178409266-178409361
Coord A exon
chr1:178411036-178411232
Coord C2 exon
chr1:178415201-178415285
Length
197 bp
Sequences
Splice sites
3' ss Seq
AACTGCAAAATTTTCATTAGGGA
3' ss Score
3.76
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AACACCTCGACCTGTTGTTGTAGAGCCAATGGAGCAATTTGATGATGAAGATGGGCTCCCAGAGAAGCTAATGCAAAAAACACAACAGTATCACAA
Seq A exon
GGAAAGAGAACAGCCTCCACGTTTTGCTCAACCTGGAACATTTGAGTTTGAGTATGCTTCACGTTGGAAGGCTCTTGATGAGATGGAAAAGCAACAGCGTGAACAGGTTGACAGGAACATTAGAGAAGCCAAAGAGAAACTAGAGGCAGAAATGGAAGCAGCTAGACATGAGCATCAGCTAATGTTGATGAGGCAAG
Seq C2 exon
ATCTCATGCGACGTCAGGAAGAATTGAGACGTTTGGAAGAACTTCGGAATCAAGAACTTCAGAAACGCAAGCAGATACAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017142_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.776 C2=0.845
Domain overlap (PFAM):
C1:
PF080756=NOPS=PU(53.8=84.8)
A:
PF080756=NOPS=PD(44.2=34.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTCGACCTGTTGTTGT
R:
CTCAACTGTATCTGCTTGCGT
Band lengths:
181-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]