DreEX0059073 @ danRer10
Exon Skipping
Gene
ENSDARG00000006621 | pspc1
Description
paraspeckle component 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9530]
Coordinates
chr1:27115160-27148673:+
Coord C1 exon
chr1:27115160-27115682
Coord A exon
chr1:27132880-27133076
Coord C2 exon
chr1:27148568-27148673
Length
197 bp
Sequences
Splice sites
3' ss Seq
ACATCAATGAACTAATACAGGGA
3' ss Score
2.47
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
TGTATAGGATGTTGAGCTCAGTTAAATGTGGGTTAACATAATAGTAAACAGTGTAATTCACAGTGTCTATTATTAAATTTTATTACAACAAACTAGAAATCGAATTGAGACAGTATTGTAATAGTTACAGTTAGGTCTGCAGCGCAATGGCAAATCCTAACCTAAAACAGGTGAATATTCAAAACAATGCAACATTCCCTCATCAGCAGAATGTTACGCGCTCTACGGAATCTCCGGGAGACCCTAAGGAAACGATGGAGGCAGTTGCTCCATCACCACAAGACCCCAGTTCTGCAAACTCTGAACCTCAAGAGATGACCGTAGACATCAAGAACTTCAGAAGACCAGGTGAAAAAACCTTCACTCAGCGTTGCAGATTATTTGTCGGTAATCTACCTTCAGATATGGCGGATGAAGATTTCAAAAAGCTCTTTTTCAAATATGGCGACGCAAAGGAGGTGTTCATCAACCGAGACAGAGGATTCGGCTTTATACGCCTG
Seq A exon
GGAAAGGGAGCATAAGCCACACTTTGCACAGCCAGGCACCTTCGAGTTTGAGTACTCTTCTCGCTGGAAAGCACTTGATGAGATGGACAAACAGCAGAGGGAACAAGTAGAACGGAACATACAAGAAGCAAAAGAGAAATTGGAGACTGAAATGGAGGCTGCCAAACAAGAACATCAACTAATGATGATGCGACAAG
Seq C2 exon
GCACGAGGAAGAAAGACGTAGACGCGAGGAAGATATGATTCGTCATAGAGAGCAGCTAGACATAAGACGCCAGCCAGATGGATTCAAGTCCGGTTTCATGGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006621_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=0.791 C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(61.5=33.9)
A:
PF080756=NOPS=PD(44.2=34.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCACAAGACCCCAGTTCT
R:
TCCTCGCGTCTACGTCTTTCT
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]