RnoEX0078275 @ rn6
Exon Skipping
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23384385-23388085:-
Coord C1 exon
chr3:23387984-23388085
Coord A exon
chr3:23387067-23387127
Coord C2 exon
chr3:23384385-23384484
Length
61 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTTCTTTCATTTCAGGAG
3' ss Score
9.78
5' ss Seq
CAGGTCGTT
5' ss Score
1.35
Exon sequences
Seq C1 exon
GAGCCAGCTGACAAGCCTACCAGACGAGAAAACCCACACAAGTATCTACTCTACAAACCGACCTTCAGCCAACTGTATACATTCTTAGCAGCGTCTTTTAAG
Seq A exon
GAGCTGCCTGCCAATAGTGTGCTTCTGATTTACCTGTCAGCCACTGGCGTTTTCCCCACAG
Seq C2 exon
GTCCTTATGACTTTGGAGGTGTACTTACTAATAGTAACCGGGACATTATCAATGGAGATGCAATCCACAAACGAAATCAGTCTCACAAAGAAATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278-'20-18,'20-17,21-18
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.294
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(5.2=100)
C2:
PF120703=DUF3550=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACCAGACGAGAAAACCC
R:
TCTCCATTGATAATGTCCCGGT
Band lengths:
146-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]