DreEX0064324 @ danRer10
Exon Skipping
Gene
ENSDARG00000060865 | scai
Description
suppressor of cancer cell invasion [Source:ZFIN;Acc:ZDB-GENE-060526-57]
Coordinates
chr5:31433802-31439187:+
Coord C1 exon
chr5:31433802-31433903
Coord A exon
chr5:31436268-31436346
Coord C2 exon
chr5:31439088-31439187
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACCGATTCTTTCATTGCTAGGAG
3' ss Score
7.21
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GAGCCCAATGAAAAGCCGGCCAAGAGAGAGAACCCTCATAAATATCTCCTCTACAAACCAACCTTCAGCCAGCTCTACACTTTCCTGTCTGCCTCCTTCAAG
Seq A exon
GAGCTGCCGGCCAATAGTGTCCTGCTGGTGTATCTCTCTGCCACTGGAGTTTTCCCCACTGGACGCTCTGAGAGTGAAG
Seq C2 exon
GACCTTATGACTTTGGAGGTGTCCTGACCAATACTAACCGAGATGTGGTGAATGGTGAGACGGTGCAGAAAAGAAACCAGGCACAAAAAGAGATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060865_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.000 C2=0.441
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(5.2=100)
C2:
PF120703=DUF3550=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAAGCCGGCCAAGAGAG
R:
CTTTTCTGCACCGTCTCACCA
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]