GgaEX6015623 @ galGal4
Exon Skipping
Gene
ENSGALG00000001037 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr17:9547775-9550549:+
Coord C1 exon
chr17:9547775-9547876
Coord A exon
chr17:9548241-9548319
Coord C2 exon
chr17:9550444-9550549
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTATTTGAATTTCAGGAG
3' ss Score
8.57
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GAGTCAACGGAGAAACCAGCCAGGCGGGAAAACCCTCATAAATACCTACTTTATAAACCAACTTTTAGCCAGCTGTACACGTTTTTAGCAGCATCATTTAAG
Seq A exon
GAGCTGCCTGCAAACAGCGTGCTGCTGATTTACTTGTCTGCCACGGGCGTGTTCCCATCAGGTCGTTCGGATAGTGAAG
Seq C2 exon
CTGTAGGCCCATACGATTTTGGTGGTGTTCTGACAAATAGTAACCGGGACGTTATAAATGGAGATGCTATCCACAAGCGAAACCAATCTTACAAGGAGATGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037-'19-16,'19-15,20-16=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.6=100)
A:
PF120703=DUF3550=FE(5.2=100)
C2:
PF120703=DUF3550=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAACGGAGAAACCAGCC
R:
CGCTTGTGGATAGCATCTCCA
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]