HsaEX0011608 @ hg19
Exon Skipping
Gene
ENSG00000173611 | C9orf126
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:26709]
Coordinates
chr9:127762170-127765494:-
Coord C1 exon
chr9:127765393-127765494
Coord A exon
chr9:127764244-127764322
Coord C2 exon
chr9:127762170-127762269
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTGATTTTCTTTCATTTCAGGAG
3' ss Score
10.08
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GAATCAGCTGACAAGCCTACTAGACGAGAAAACCCCCACAAGTATCTGCTCTACAAACCAACCTTCAGCCAGCTATATACCTTCTTAGCAGCGTCTTTTAAG
Seq A exon
GAGCTGCCTGCCAATAGCGTGCTTCTGATTTACCTGTCGGCCACTGGCGTTTTCCCCACAGGTCGTTCTGATAGTGAAG
Seq C2 exon
GTCCTTATGATTTTGGAGGTGTACTTACTAATAGTAACCGGGATATTATTAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611-'13-16,'13-14,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.284
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(10.3=100)
A:
PF120703=DUF3550=FE(5.2=100)
C2:
PF120703=DUF3550=PU(13.3=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCACAAGTATCTGCTCT
R:
GTGCATTTCCTTGTGGGACTGA
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)