BtaEX6046142 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95954330-95957744:-
Coord C1 exon
chr11:95957643-95957744
Coord A exon
chr11:95956266-95956344
Coord C2 exon
chr11:95954330-95954429
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTGATTTTCTTTCATTTCAGGAG
3' ss Score
10.08
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GAATCAGCTGACAAGCCTACCAGGCGAGAAAACCCCCACAAGTATCTGCTCTACAAGCCAACCTTCAGCCAACTATACACTTTCTTAGCAGCATCTTTTAAG
Seq A exon
GAGCTGCCTGCCAATAGCGTGCTTCTGATTTACCTGTCAGCCACTGGCGTTTTCCCCACAGGTCGTTCTGATAGTGAAG
Seq C2 exon
GTCCTTATGATTTTGGAGGGGTACTTACTAATAGTAACCGAGATATTATAAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553-'15-12,'15-11,17-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.279
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(5.2=100)
C2:
PF120703=DUF3550=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCACAAGTATCTGCTCT
R:
TGCATTTCCTTGTGGGACTGA
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]