MmuEX0041120 @ mm10
Exon Skipping
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:39099376-39103304:-
Coord C1 exon
chr2:39103203-39103304
Coord A exon
chr2:39102321-39102399
Coord C2 exon
chr2:39099376-39099475
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTTCTTTCATTTCAGGAG
3' ss Score
9.78
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GAGCCAGCTGACAAGCCCACCAGACGAGAAAACCCCCACAAGTATCTACTCTACAAACCGACTTTCAGCCAACTGTATACATTTTTAGCAGCATCTTTTAAG
Seq A exon
GAGCTGCCTGCCAATAGTGTGCTTCTGATTTACCTGTCAGCCACTGGCGTTTTCCCCACAGGTCGTTCTGATGGTGAAG
Seq C2 exon
GTCCTTATGACTTTGGAGGTGTACTTACTAATAGTAACCGGGACATTATCAATGGAGATGCTATCCACAAGCGAAATCAGTCTCACAAGGAAATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236_MULTIEX3-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.298
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(5.2=100)
C2:
PF120703=DUF3550=PU(14.7=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCACCAGACGAGAAAA
R:
TTTCGCTTGTGGATAGCATCTCC
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types