RnoEX0078549 @ rn6
Exon Skipping
Gene
ENSRNOG00000005018 | Scn2a
Description
sodium voltage-gated channel alpha subunit 2 [Source:RGD Symbol;Acc:3632]
Coordinates
chr3:51802609-51809067:+
Coord C1 exon
chr3:51802609-51802782
Coord A exon
chr3:51805518-51805640
Coord C2 exon
chr3:51808786-51809067
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGCGTGCTCTTTTCGTATAGGTC
3' ss Score
9.71
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCCTTTGAAGACATTTATATTGAGCAGCGAAAGACCATCAAGACCATGCTGGAGTATGCTGACAAGGTTTTCACTTATATCTTCATCCTGGAGATGCTTCTAAAGTGGGTGGCCTATGGTTTCCAAATGTATTTCACCAATGCCTGGTGCTGGCTGGACTTCCTGATCGTTGAT
Seq A exon
GTCTCCTTGGTTAGCTTAACTGCAAATGCCTTGGGCTATTCGGAACTTGGTGCCATCAAGTCCCTCCGAACGTTAAGAGCTCTGAGACCTCTACGAGCCTTATCCCGATTTGAAGGAATGAGG
Seq C2 exon
GTTGTTGTAAACGCTCTCTTAGGCGCCATCCCCTCCATAATGAACGTACTTCTGGTCTGCCTGATCTTTTGGCTAATATTCAGTATCATGGGGGTGAATCTCTTTGCTGGCAAGTTCTACCATTGCATCAACTACACCACGGGGGAAATGTTTGATGTGAGCGTGGTCAACAACTACAGTGAATGCCAAGCTCTCATTGAGAGCAATCAGACGGCCAGGTGGAAGAACGTGAAGGTCAACTTCGATAACGTGGGACTCGGATACCTTTCTCTGCTCCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005018-'29-34,'29-33,30-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.0=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGACTTCCTGATCGTTG
R:
CCTTCACGTTCTTCCACCTGG
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]