RnoEX6005511 @ rn6
Exon Skipping
Gene
ENSRNOG00000015152 | Pkp3
Description
plakophilin 3 [Source:RGD Symbol;Acc:1309133]
Coordinates
chr1:213891053-213892839:+
Coord C1 exon
chr1:213891053-213891684
Coord A exon
chr1:213891780-213891903
Coord C2 exon
chr1:213892635-213892839
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTAACCCCTGATTCTACAGCTT
3' ss Score
6.94
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
GGGGGTGCCCAGCCCACTCCACCTATGCCCACCCGGCCAGTGTCCTTCCATGAGCGAGGTGGGGCAGCCAGCAGAGCTGACTATGACACATTGTCCCTGCGCTCACTGAGGCTGGGGCCGGGGGGCCTGGACGACCGTTACAGCGTGGTGTCTGAGCAACTAGAGCCTGCAGCCGCCTCTACCTACAGAGCCTATGCTTACGAACGCCAGGCCAGCTCCAGCTCTAGCCGAGCGGGAGGCCTGGACTGGCCAGAGGCCACTGAGGGACCACCCAGCAGGACCATCCGTGCGCCTGCCATGCGGACCCTGCAACGATTTCAGAGCAGCCACCGAAGCCGTGGGGGTACCGGGTCAGTGTCAGGAGCTGGCCTGGAGCCAGTGGCCCGAGCCCCATCTGTACGTAGCCTCAGTCTTAGCCTGGGTGACTCAGGCCACCTGCCGGACGTACGTGGGTTGGACAGCTACACAGGCCACCGAACCCTGCAGAGGCTCAGCAGTGG
Seq A exon
CTTTGATGACATTGACCTGCCTTCAGCAGTCAAGTACCTCATGGCCTCAGACCCCAACCTGCAGGTGCTGGGGGCGGCTTACATCCAGCACAGATGCTACAGTGATGCAGCAGCCAAGAAGCAG
Seq C2 exon
GCTCGCAGCCTCCAGGCAGTGCCGAGACTGGTGAAGCTCTTCAACCACGCCAACCAGGAGGTGCAGCGCCATGCCACCGGTGCCATGCGCAACCTCATCTATGACAACGTGGACAACAAACTGGCCTTGGTGGAGGAGAATGGCATCTTTGAGCTGTTGAGGACGCTTCGAGAGCAGGACGATGAGCTGCGCAAAAATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015152-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(14.6=14.3)
C2:
PF0051418=Arm=PD(80.5=47.8),PF0051418=Arm=PU(80.5=47.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATCTGTACGTAGCCTCA
R:
CTCCACCAAGGCCAGTTTGTT
Band lengths:
247-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]