MmuEX6015132 @ mm10
Exon Skipping
Gene
ENSMUSG00000054065 | Pkp3
Description
plakophilin 3 [Source:MGI Symbol;Acc:MGI:1891830]
Coordinates
chr7:141082555-141084259:+
Coord C1 exon
chr7:141082555-141083186
Coord A exon
chr7:141083263-141083386
Coord C2 exon
chr7:141084055-141084259
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTAAACCCCTGATTCTACAGCTT
3' ss Score
5.92
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
GGGGGTACCCAGCCCACTCCACCTATGCCCACCCGGCCAGTGTCCTTCCATGAGCGAGGTGGGGCAGCCAGCAGAGCTGACTATGACACATTATCCCTGCGCTCACTGAGGCTGGGGCCAGGGGGCCTGGATGACCGTTACAGCGTGGTATCTGAGCAACTGGAGCCTGCAGCCGCCTCTACCTACAGGGCCTATGCTTACGAGCGCCAGGCTAGCTCCGGCTCTAGCCGAGCAGGGGGCCTGGACTGGCCAGAGGCCACAGAGGGACCACCCAGCAGGACCATCCGTGCACCTGCCATGCGAACCCTGCAAAGATTTCAGAGCAGCCACCGAAGCCGTGGGGGTACCGGGTCAGTGTCAGGTGCCGGCTTGGAGCCAGTGGCCCGAGCCCCATCTGTGCGCAGCCTCAGTCTTAGCCTGGCTGACTCAGGCCACCTGCCAGATGTACGCGGGCTGGACAGCTACACGGGCCATCGAACCCTGCAGAGGCTCAGCAGTGG
Seq A exon
CTTTGATGACATTGACCTGCCTTCAGCAGTCAAGTACCTCATGGCCTCAGACCCCAACCTGCAGGTGCTGGGAGCAGCTTACATCCAGCACAGGTGTTACAGTGATGCCGCCGCCAAGAAGCAG
Seq C2 exon
GCTCGCAGCCTTCAGGCAGTGCCTAGACTGGTGAAGCTCTTCAACCACGCCAACCAGGAGGTGCAGCGCCACGCCACAGGTGCCATGCGCAACCTCATCTACGACAATGTAGACAACAAGCTGGCGTTGGTAGAGGAGAATGGCATTTTTGAGCTGTTGCGGACACTTCGAGAGCAGGATGATGAGCTACGCAAAAATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054065-'3-22,'3-13,14-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(14.6=14.3)
C2:
PF0051418=Arm=PD(80.5=47.8),PF0051418=Arm=PU(80.5=47.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGCCTGGCTGACTCAGG
R:
AGTGTCCGCAACAGCTCAAAA
Band lengths:
257-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types