BtaEX6104461 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048098 | PKP3
Description
Bos taurus plakophilin 3 (PKP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076858]
Coordinates
chr29:51275660-51277009:-
Coord C1 exon
chr29:51276384-51277009
Coord A exon
chr29:51276173-51276296
Coord C2 exon
chr29:51275660-51275864
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCCGGCTCTTGTCTCTGCAGATT
3' ss Score
12.09
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GGGTACCGGGGTGCCCCGCCCACTGCACCAGTGCCCGCCCGGCCTGTGTCCTTCCACGAGCGTGGTGGGGCAGGCAGCCGGGCAGATTACGACACCTTGTCCCTGCGCTCACTGAGGCTGGGGGCCGGGGGCCCAGACGACCGATACAGCGTGGTGTCCGAGCAGCTGGAGCCGGCAGCCACGTCCTCCTACAGGGCCTTTGCCTACGAGCGCCGGGCCAGCTCCAGCTCTAGCCGGGCTGGGGGCCTGGACTGGCCGGAGGCTACCGAGGGACCACCCAGCCGGACCATCCGTGCCCCTGCCATGCGGACCCTGCAGCGGTTTCAAAGCAGCCACCGCAGCCGTGGAGTGGCTGCGGGCGGGCCCGGGGGCGTCCTGGAGCCCGTGACCCGCGCACCATCTGTGCGCAGCCTCAGCCTCGGTGACTCGGGCCACCTGCCGGACATGCGCGGGCTGGACAGCTACGGCGGCCACCGCACCCTGCAGAGGCTCAGCAGCGG
Seq A exon
ATTCGATGACATCGACCTGCCCTCAGCAGTCAAGTACCTCATGGCCTCAGATCCCAACCTGCAGGTGCTGGGAGCTGCCTACATTCAGCACAAGTGTTACAGCGATGCAGCCGCCAAGAAGCAG
Seq C2 exon
GCCCGCAGCCTGCAGGCTGTGCCCAGGCTGGTGAAGCTCTTCAACCACGCCAACCAGGAAGTGCAGCGCCACGCCACAGGCGCCATGCGCAACCTCGTCTACGACAACGCGGACAACAAGCTGGCCCTGGTGGAGGAGAACGGCATCTTCGAGCTGCTGCGGGCGCTGCGGGAGCAGGACGACGAGCTCCGCAAGAACGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048098-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(14.6=14.3)
C2:
PF0051418=Arm=PD(80.5=47.8),PF0051418=Arm=PU(80.5=47.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGCAGCGGTTTCAAAG
R:
TTGGCGTGGTTGAAGAGCTTC
Band lengths:
245-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]