DreEX6005968 @ danRer10
Exon Skipping
Gene
ENSDARG00000079438 | PKP3 (2 of 2)
Description
plakophilin 3 [Source:HGNC Symbol;Acc:HGNC:9025]
Coordinates
chr7:32681521-32693810:-
Coord C1 exon
chr7:32693173-32693810
Coord A exon
chr7:32691572-32691695
Coord C2 exon
chr7:32681521-32681725
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGTAAATGAACAGAAT
3' ss Score
5.03
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
CTGAGTAGCTCTTACAACCAGATGCAAACATCTGAATCGAGGACACTGAGTCGGACTGAGCAGGAGGTGGCAGCGATGGCCGGGCTCACATTGCAGCGCCAACCATCTCCTGTGGGGAACTGGATGCCTAATTATGGCCAAAGCCCTTCACCTAACACCGCACACAGGCAACGCACCCTCAGCGGGACGCTGGCACGGGAGGGTTTTAACACTGGATGGAGAGAGGCAGAGTTGGCTAATCAATATGCATTTAAAGGCCCTTCCCATCGGACCATCAGCCGTATAAACAATCGCCAGGTGCAGCAGCAACAGCATCAGAGGCTGAGCGGCAGTTCAATGCAGTGGCAGCAGATGTCCACTGGGGGCAACAGTCTGATGGGTGCGGGACACTACCAGGGAACCATCAAGAGAGCCGGGTCCGTGCATAGCATGAAAAGCGTGGGTCGTGGTGTGGACGTTTATGATGGATTGGCCGATGGAACTGCAGATGGTCTTGGCGG
Seq A exon
AATCCATAACCTGGACATGACCACAGCAGTCAGTTACCTCTCTTCTACTGACGTCTCCATGCAGATGTTGGGAGCAGCTTACGTACAGCATCAGTGTTACCACAGCAATGAAGCCAAGACCATG
Seq C2 exon
GTGCGGAGTTTAAAGGGCATCTCAGCCCTGGTGCAGCTGTTCAGCAGTGAGAACCAGGAGGTGCAGCGCTACGCTACAGGTGCTACACGCAACCTCATCTATGAGAATATGGACAACAAAACAGCCCTTATTGAAGCCGGCGGCATTAGCAAACTCATTGGTGCTTTAAGAGAACCAGATGATGAACTACGCAAAAATATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079438-'4-4,'4-2,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(14.6=14.3)
C2:
PF0051418=Arm=PD(80.5=47.8),PF0051418=Arm=PU(80.5=47.8),PF040639=DUF383=PU(5.6=23.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATCAAGAGAGCCGGGTC
R:
CCGGCTTCAATAAGGGCTGTT
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]