GgaEX0005661 @ galGal4
Exon Skipping
Gene
ENSGALG00000004260 | PKP3
Description
plakophilin 3 [Source:HGNC Symbol;Acc:HGNC:9025]
Coordinates
chr5:1564724-1565714:-
Coord C1 exon
chr5:1565560-1565714
Coord A exon
chr5:1565069-1565192
Coord C2 exon
chr5:1564724-1564928
Length
124 bp
Sequences
Splice sites
3' ss Seq
CATCTGCCTGTGGCTTCCAGGTT
3' ss Score
8.34
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GCGGCTCTTGGGAGTTCCTACATGGGCATGGTGGAGCACAGCTCCCGTGCGCCCTCCGTGCGCAGCCTGGCTGAGTCCAGCCACCACCTCCAGGATCAGCGTGCCATGGATATGTACAACGGGCACAGCACGCTGCTCACCCAGCAGTCAGGAGG
Seq A exon
GTTTGACGACATTGACCTGCCCTCAGCGGTGAAATACCTGATAGCCAGTGACCCCAACCTACAAGTCCTGGGTGCTGCCTACCTCCAGCACAAATGCTACAGTGACAGTAATGCCAAGAAGCAG
Seq C2 exon
GCTCGCAGCCTCCAGGCCATGCCCAAGCTGGTGAAGCTCTTTAACAGCCCTAACCAGGAGGTGCAGCGCCATGCAACAGGTGCCATGCGCAACCTCATCTACGACAATGCTGAGAACAAGCTGGCGCTGGTGGAGGAGAACGGCATCTATGAGCTCATGAGGACACTGCGGGAGTCCGATGATGAGCTCCGCAAGAATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004260_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=0.048 C2=0.087
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(14.6=14.3)
C2:
PF0051418=Arm=PD(80.5=47.8),PF0051418=Arm=PU(80.5=47.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTACATGGGCATGGTGG
R:
TTGTCGTAGATGAGGTTGCGC
Band lengths:
249-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]