RnoEX6017111 @ rn6
Exon Skipping
Gene
ENSRNOG00000004966 | Slc38a11
Description
solute carrier family 38, member 11 [Source:RGD Symbol;Acc:1306005]
Coordinates
chr3:51386077-51391094:-
Coord C1 exon
chr3:51391024-51391094
Coord A exon
chr3:51389937-51390098
Coord C2 exon
chr3:51386077-51386189
Length
162 bp
Sequences
Splice sites
3' ss Seq
GGTTTTCTTTGATGTTGCAGCGT
3' ss Score
7.32
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ACCAAAGACAGACAATGCTTGGGTGTTTGCAAGGCCCAATGCCATCCAGGCTATTGGGGTGATGTCTTTTG
Seq A exon
CGTTCATCTGCCACCATAACTGCTTCCTAGTGTATGGGTCTTTAGAAGAGCCCACAGTGGCCAAGTGGCGGCGGGTCATCCACACGTCCATCTTGGTTTCTGTGTTCATCTGTGTGCTCTTTGCTACGTGTGGGTACTTCACTTTTACTGGCTTCACTCAAG
Seq C2 exon
GAGACTTGTTTGAAAATTACTGCAGAAGTGATGACCTGGTGACCTTTGGGAGGTTTTGTTACGGCATCACTGTTATTTTGACTTACCCAATTGAATGCTTTGTGACCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004966-'9-12,'9-10,10-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(6.2=100)
A:
PF0149013=Aa_trans=FE(13.9=100)
C2:
PF0149013=Aa_trans=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGACAATGCTTGGGTGT
R:
CTCTCTGGTCACAAAGCATTCA
Band lengths:
179-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]