DreEX6038649 @ danRer10
Exon Skipping
Gene
ENSDARG00000040257 | slc38a11
Description
solute carrier family 38, member 11 [Source:ZFIN;Acc:ZDB-GENE-050417-122]
Coordinates
chr9:50329065-50329685:+
Coord C1 exon
chr9:50329065-50329135
Coord A exon
chr9:50329221-50329382
Coord C2 exon
chr9:50329573-50329685
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTGATCTTTTTCAGCTT
3' ss Score
8.3
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ACCTGCGTCAGATGATGCATGGGTTTTTGCACGGTGGAATGCAATTCAGGCAGTCGCTGTAATGTCTTTCG
Seq A exon
CTTTAATCTGCCACCATAACAGCTTCATGATCTACGGGTCGCTGCAGGAGCCCACCCTGAGCAGGTGGTCTCTCGTCACACACATATCCGTGGGCTCATCTGTACTGGTCAGTGCTGTCTTTGCTGCAGCAGGTTATGCCACTTTTACTGTTTACACACAAG
Seq C2 exon
GTGATATATTTGAGAACTACTGCAGGTCTGATAACTTGGCTACATTCGGCCGGTTCTGCTATGGTGTCAGTATAATCACTACATTTCCTCTGGAGTGCTTTGTAACACGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040257-'11-13,'11-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(6.2=100)
A:
PF0149013=Aa_trans=FE(13.8=100)
C2:
PF0149013=Aa_trans=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGATGATGCATGGGTTT
R:
TCACGTGTTACAAAGCACTCCA
Band lengths:
178-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]