BtaEX0033186 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007650 | SLC38A11
Description
Bos taurus solute carrier family 38, member 11 (SLC38A11), mRNA. [Source:RefSeq mRNA;Acc:NM_001031760]
Coordinates
chr2:31426808-31430698:+
Coord C1 exon
chr2:31426808-31426878
Coord A exon
chr2:31427545-31427706
Coord C2 exon
chr2:31430586-31430698
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCCTTGTATTGCAGCAT
3' ss Score
10.15
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ACCAAAAACAGAAGATGCTTGGATATTTGCAAAGCCCAACGCCGTTCAGGCTGTTGGTGTGATGTCATTTG
Seq A exon
CATTTATTTGCCACCATAACTGCTTCTTAGTTTATGGTTCTTTGGAAGAACCTACAGTAGCTAAGTGGTCTCACATCATCCATGTGTCTACCTTGATTTCTGTATTTATCAGTATTCTCTTTGCTACGTGTGGATACTTGACATTTACTGGCTACACCCAAG
Seq C2 exon
GAGACTTGTTTGAAAATTATTGCAGAAATGATGACTTGGTAACATTTGGAAGGTTTTGCTATGGAGTCACTGTCATTTTGACATACCCCATTGAATGCTTTGTGACTAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007650_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(6.2=100)
A:
PF0149013=Aa_trans=FE(13.8=100)
C2:
PF0149013=Aa_trans=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAAACAGAAGATGCTTGGA
R:
AGTCACAAAGCATTCAATGGGGT
Band lengths:
178-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development