GgaEX0016577 @ galGal3
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
NA
Coordinates
chr7:21495473-21497858:+
Coord C1 exon
chr7:21495473-21495543
Coord A exon
chr7:21495911-21496072
Coord C2 exon
chr7:21497746-21497858
Length
162 bp
Sequences
Splice sites
3' ss Seq
AACTATTATGTGTATTTCAGCAT
3' ss Score
6.98
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ACCCAAATCAGAAAATGCATGGATATTTGCAAAATCAAATGCAATACAAGCTGTTGGGGTGATGTCTTTTG
Seq A exon
CATTCATCTGCCATCATAACAGCTTTTTAATATATGGCTCTCTGAAAGAACCCACATTAAACAACTGGTCTCGAATCACACATATGTCTGTTTTACTTGCTGTTGTTATCAGTGTACTATTTGCTGCATGTGGATACATGACTTTTACAGGATACACTGAAG
Seq C2 exon
GAGATATATTTGAAAACTACTGTAGAGATGACAACCTTGCTACATTTGGAAGGTTTTGTTATGGAGTTACTGTAATTCTGACCTTTCCTCTTGAATGTTTTGTCACCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(6.2=100)
A:
PF0149013=Aa_trans=FE(13.9=100)
C2:
PF0149013=Aa_trans=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAATCAGAAAATGCATGGA
R:
TCTGGTGACAAAACATTCAAGAGGA
Band lengths:
181-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]