DmeEX0000840 @ dm6

Exon Skipping

Gene

Description

This gene is referred to in FlyBase by the symbol DmelCG13743 (FBgn0033368). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 2R:9044850..9060608. Its molecular function is described by: amino acid transmembrane transporter activity. It is involved in the biological process described with: amino acid transmembrane transport. 8 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: lethal - all die before end of pupal stage; some die during pupal stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.

Coordinates

chr2R:9047914-9050132:-

Coord C1 exon

chr2R:9049880-9050132

Coord A exon

chr2R:9048176-9048337

Coord C2 exon

chr2R:9047914-9048026

Length

162 bp

Sequences

Splice sites

3' ss Seq

TTGGACATCCGTCCGTGCAGCTT

3' ss Score

5.36

5' ss Seq

AAGGTGAGG

5' ss Score

9.16

Exon sequences

Seq C1 exon

CCATGATTTCCTACAACGTGGTGGTGGGCGATACGCTGTCGAAGGTTCTGGTCCGCTTCTTCCCCTCCTGGGGCGGTTCCATGGGCGCCGTCCGACTGGGCGTGGTCTTCTTCGTCAACGTGGGCGTGGTGATGCCCCTCTGTCTCTACAAGAACGTCTCCAGACTGGCCAGAGCCAGCTTCATTAGCCTGGCGTGCGTGGTCTTCATCCTGTTTGCCGTCATCATCAAGCTCATGTCGGGCGATTATAAGGT

Seq A exon

CTTTCATGTGTCATCACAACACCTTCCTCGTTTATCAATCGATGCGCGACGCGACCATGGAGCGCTGGGAGAAGGTCACCCACATTTCGATTGGATTTGCCTGGACGGTGGCGGCCCTCTTCGGCATCGCCGGCTACTCCACCTTCCGCGCTCTTTCCCAAG

Seq C2 exon

GCGACCTGCTGGAGAACTACTGCTGGGATGACGACCTGATGAACTTCTCGCGTGTGCTCTTCTCCATATCGATACTCCTGACCTTCCCCATCGAGTGCTTCGTGTCCCGCGAG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0033368_MULTIEX1-2/2=C1-C2

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)