MmuEX6101677 @ mm10
Exon Skipping
Gene
ENSMUSG00000061171 | Slc38a11
Description
solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Coordinates
chr2:65330280-65335802:-
Coord C1 exon
chr2:65335732-65335802
Coord A exon
chr2:65334590-65334751
Coord C2 exon
chr2:65330280-65330392
Length
162 bp
Sequences
Splice sites
3' ss Seq
GGTTTTCTTTTGTGTTCCAGCGT
3' ss Score
8.46
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ACCAAAGACAGACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCCAGGCTATTGGGGTGATGTCTTTTG
Seq A exon
CGTTCATTTGCCACCATAACTGCTTCCTAGTCTATGGTTCTCTCGAAGAGCCCACAGTAGCGAAGTGGCGCCGGATTATCCACACATCCATCTTGGTTTCTGTATTCATCTGTGTGCTCTTTGCAACGTGCGGGTACTTCACTTTTACTGGCTTCACTCAAG
Seq C2 exon
GAGACTTGTTTGAAAATTACTGCAGAAGTGATGACCTGGTGACCTTTGGGAGGTTTTGTTATGGTATCACTGTCATTTTGACTTACCCGATTGAATGCTTTGTGACCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061171-'13-14,'13-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(6.2=100)
A:
PF0149013=Aa_trans=FE(13.9=100)
C2:
PF0149013=Aa_trans=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGACAGACAATGCTTGGG
R:
GGTCACAAAGCATTCAATCGGG
Band lengths:
178-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types