RnoEX6017137 @ rn6
Exon Skipping
Gene
ENSRNOG00000005018 | Scn2a
Description
sodium voltage-gated channel alpha subunit 2 [Source:RGD Symbol;Acc:3632]
Coordinates
chr3:51748366-51749929:+
Coord C1 exon
chr3:51748366-51748455
Coord A exon
chr3:51749332-51749460
Coord C2 exon
chr3:51749838-51749929
Length
129 bp
Sequences
Splice sites
3' ss Seq
GACTTGGCTATTTTTCTCAGGTA
3' ss Score
6.32
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
TTTATTCAATGTGCTTATCATGTGCACAATTCTTACCAACTGTGTGTTTATGACCATGAGTAACCCTCCAGACTGGACAAAGAATGTGGA
Seq A exon
GTATACTTTTACAGGAATTTATACTTTTGAATCACTTATTAAAATCCTTGCAAGGGGCTTTTGTCTAGAAGATTTCACATTTCTACGGGATCCCTGGAATTGGTTGGATTTCACAGTCATTACTTTTGC
Seq C2 exon
GTATGTAACAGAATTTGTAAACCTAGGCAATGTTTCAGCTCTTCGAACTTTCAGAGTCTTGAGAGCTTTGAAAACTATTTCTGTAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005018-'6-11,'6-10,7-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.7=6.5)
A:
PF0052026=Ion_trans=FE(16.0=100)
C2:
PF0052026=Ion_trans=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAATGTGCTTATCATGTGCA
R:
ACAGAAATAGTTTTCAAAGCTCTCA
Band lengths:
171-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]