RnoEX6037790 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117707387-117707880:+
Coord C1 exon
chr8:117707387-117707422
Coord A exon
chr8:117707711-117707755
Coord C2 exon
chr8:117707845-117707880
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATATCTGTTTCTCTTCCCAGGGG
3' ss Score
11.02
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTGAACGGGGACCACCTGGTCCCGTGGGACCCCAG
Seq A exon
GGGCTTCCCGGAGCTGCTGGACGTCCTGGAGTGGAGGGTCCTGAG
Seq C2 exon
GGGCCACCAGGACCCCCTGGCCGCCGGGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'48-46,'48-45,49-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.3=66.7),PF0139113=Collagen=FE(18.0=100)
A:
PF0139113=Collagen=FE(23.0=100)
C2:
PF0139113=Collagen=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]