RnoEX6038246 @ rn6
Exon Skipping
Gene
ENSRNOG00000032884 | Scn11a
Description
sodium voltage-gated channel alpha subunit 11 [Source:RGD Symbol;Acc:3630]
Coordinates
chr8:128450801-128457393:-
Coord C1 exon
chr8:128457289-128457393
Coord A exon
chr8:128455816-128456086
Coord C2 exon
chr8:128450801-128452358
Length
271 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTTTTCCTCTTCAGAAC
3' ss Score
12.65
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TTAGGTGGCCAAGACATTTTTATGACAGAAGAACAGAAGAAATATTACAATGCAATGAAAAAGTTAGGAACCAAGAAACCTCAAAAGCCCATCCCAAGGCCCCTG
Seq A exon
AACAAATGTCAAGCCTTTGTGTTCGACCTGGTCACAAGCCAGGTCTTTGACGTCATCATTCTGGGTCTTATTGTCTTAAATATGATTATCATGATGGCTGAATCTGCCGACCAGCCCAAAGATGTGAAGAAAACCTTTGATATCCTCAACATAGCCTTCGTGGTCATCTTTACCATAGAGTGTCTCATCAAAGTCTTTGCTTTGAGGCAACACTACTTCACCAATGGCTGGAACTTATTTGATTGTGTGGTCGTGGTTCTTTCTATCATTA
Seq C2 exon
GTACCCTGGTTTCCCGCTTGGAGGACAGTGACATTTCTTTCCCGCCCACGCTCTTCAGAGTCGTCCGCTTGGCTCGGATTGGTCGAATCCTCAGGCTGGTCCGGGCTGCCCGGGGAATCAGGACCCTCCTCTTTGCTTTGATGATGTCTCTCCCCTCTCTCTTCAACATCGGTCTGCTGCTCTTCCTGGTGATGTTCATTTACGCCATCTTTGGGATGAGCTGGTTTTCCAAAGTGAAGAAGGGCTCCGGGATCGACGACATCTTCAACTTCGAGACGTTTACGGGCAGCATGCTGTGCCTCTTCCAGATAACCACTTCGGCTGGCTGGGATACCCTCCTCAACCCCATGCTGGAGGCAAAAGAACACTGCAACTCCTCCTCCCAAGACAGCTGTCAGCAGCCGCAGATAGCCGTCGTCTACTTTGTCAGTTACATCATCATCTCCTTCCTCATCGTGGTCAACATGTACATCGCTGTGATCCTCGAGAACTTCAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032884-'37-33,'37-31,38-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(21.1=47.3)
C2:
PF0052026=Ion_trans=PD(78.4=46.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAAAGCCCATCCCAAGG
R:
GAAGATGTCGTCGATCCCGGA
Band lengths:
293-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]