RnoEX6050325 @ rn6
Exon Skipping
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98528699-98531593:-
Coord C1 exon
chr10:98531446-98531593
Coord A exon
chr10:98529878-98530046
Coord C2 exon
chr10:98528699-98528757
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTATCGCTCTTGCTAACTAGGTG
3' ss Score
8.45
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATTATCTTCCTGGAGTACAACTTGAATGGTGTCGTATTTCCTGACCCTTCCGGAGAATCATATGTAATGATAGCAGTATTTTTCATATTGGCTTTTGATGGTCTTCTCTACTTGGTTTTGGCCTTGTATTTTGACAAAATCTTGCCCT
Seq A exon
GTGGGGCTGATCGCCGGGCCGCTCCACTGTTTTTCTTGAATCCGGTGTCTTGTTTTCGAAAAAGGACCAGTAGAAACAAGGTCACTGAGAGAGACATAGACCCCGAGCTTCCTTCGGATGAGTATTTTGAGCCCGTGGATCCAGAATACCAAGGGAAAGAAGCCATCAG
Seq C2 exon
AATAAGAAATATTAGAAAGGAATATAAAGGGAAGTCTGGGAAAGTGGAGGCTTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGGAGTACAACTTGAATGG
R:
TTTCAAAGCCTCCACTTTCCCA
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]