BtaEX6091153 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62047372-62053477:+
Coord C1 exon
chr19:62047372-62047519
Coord A exon
chr19:62048918-62049086
Coord C2 exon
chr19:62053419-62053477
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTTTACCACCTCTTAACTAGATG
3' ss Score
5.82
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
ATTATCCACCTGGATTATACTATGAATGGTGTCATTTTTCCTGACGCTTCTGGAGACTCATATATAATGATAGCTACTTTTTCCATATTGACTTTCGATGCCCTTTTATACTTGGCATTGGCGTTATACTTTGACAAAATCCTACCCT
Seq A exon
ATGGAAACGAGTCCCATTATTCGCCATTGTTTTTCCTGAACTCGTCACCTTGCTTCCAACACCGGAGGACTGGTAGTCACGTCGCCTGGAAAGACGTGGACCCTGAGCCCGCCGCGGGTGATTACTGTGAGCCCGTAGCCCCAGAATTCCACGGGAGAGAAGCCGTCAG
Seq C2 exon
AATCAGAAATGTTAAAAAAGTATATAAAGAAAAAACTGGAAAAGTGGAAGTATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'11-8,'11-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTGGATTATACTATGAATGGT
R:
CTTTCAATACTTCCACTTTTCCAGT
Band lengths:
203-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]