GgaEX0026411 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7956879-7958107:-
Coord C1 exon
chr18:7957975-7958107
Coord A exon
chr18:7957205-7957361
Coord C2 exon
chr18:7956879-7956937
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTCTGATTGTTTCTATTTAGGCA
3' ss Score
8.76
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATTGTAAAATTAGAAAAATATGGACCGACTGTCGCAGCAGAGTTGTACCCTTTCTTTAACCTATATGGCATGCTGATCCTGGACAGCATTCTGTATTTGCTGCTGGCCATCTACTTTGATAAGGTTTTGCCTG
Seq A exon
GCAAATACGGCGTGCCGTACCCCCCGCTGTTCTTTCTGAGGCCGTCGTATTGGCTGCAGTGGGGCAGCAAGCGCAGCACCCAGCCTGACCCCATCCCTGTCCCTGGCTGTGACACCGAGCCCATGCCTGAGGGCTTCGAGGGGAAGGAGGCCATCAG
Seq C2 exon
ACTATACAACATTAGAAAAACATACAAGAGGAAGGGCAAGATAACCGAAGCTTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021391-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(38.9=82.2)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.7=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTAGAAAAATATGGACCGACTGT
R:
CTCTTAAAGCTTCGGTTATCTTGCC
Band lengths:
186-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]