BtaEX6091177 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62113103-62115981:+
Coord C1 exon
chr19:62113103-62113250
Coord A exon
chr19:62113674-62113842
Coord C2 exon
chr19:62115920-62115981
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTTACCGCCTGTTCATGTAGCTG
3' ss Score
7.43
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTTATCCATTTGGACTACGACGTGAATTCTAACATCCATTCAGATTCTCCAAACGACCAGTACCTCATAATAGCTACTATTTTCATGCTGGTTTTTGATGCTCTTCTCTATTTGGTATTGACGTTGTATTTGGACAAAATTTTGCCCA
Seq A exon
CTGAATATGGACGTCAGCAGCCTCCCTGGTTTTTCCTTAAATCCTCTTCTTGGTTCCAACGCCGAAGGGCTGATCGTGCGGCCCTCGAGAATGACATCGATCCAGATTCTCCATCCGATGACTCTTTTGAACCAGTGTCTGCAGAATTCCACGGGAAAGAAGCCATCAG
Seq C2 exon
AATAAGAAATCTTAAAAAGGCATATGGAAAAGGCAAGCACGAAAAAGTAGAAGCTTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTTGGACTACGACGTGA
R:
TCAAAGCTTCTACTTTTTCGTGCT
Band lengths:
203-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]