RnoEX6050299 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98455526-98458275:-
Coord C1 exon
chr10:98458128-98458275
Coord A exon
chr10:98457003-98457171
Coord C2 exon
chr10:98455526-98455584
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCACTTCCTGTCCCTATAGGTA
3' ss Score
12.35
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTTATACATTTGGACTATGATGTGAATTCTAATGTAAATTTGAACTCTCCAAACAACTCGTACCTAATCCTGGCCACCCTCTTCATGTTGGTTTTGGATGCTCTTCTCTATTTGGCACTGGCATTGTATTTTGACAAGATTTTACTCA
Seq A exon
GTAAGTACGGACATCAGCGTTCTCCGTTGTTTTTCCTGAAGTCATCTTACTGGTTTCAACGCAGAGGAGCTGATCATGTGGTCCTTGAGAATGAAATAGACTCTGCTCCTTCACTCAATGACTCATTGGAACCCGTGTCTCCAGAATTCCAGGGGAAAGAAGCTATCAG
Seq C2 exon
GATCAAAAATCTTAGAAAGGAATATACAGGAAAGCATGGAAAAGTAGAAGCCTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGAACTCTCCAAACAACTCGT
R:
CTCTTAAGGCTTCTACTTTTCCATGC
Band lengths:
170-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]