GgaEX0026414 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8198158-8199524:-
Coord C1 exon
chr18:8199377-8199524
Coord A exon
chr18:8198697-8198868
Coord C2 exon
chr18:8198158-8198216
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTCTGTCATGCCAGGTA
3' ss Score
8.19
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
ATTTTCAGTTTGGAAAGATATGGAATAGGTTTCTCTTTTTCTAACATTATGGAGGAATCATACTTTTTACTTTCGACCTACATTATGCTGACCTTTGACTCGGTCTTGTACATGCTGTTAGCTATCTACTTCGACAAAGTTCTGCAGG
Seq A exon
GTAAATACGGCATCCCAGCTCCACCGCTTTTCTGCCTGAAGCCCTCGTATTGGATGCAGAGCAGGAGGGGCTCTCCTGGGGAAGGGCACAGAGGTGCTGGGAGCCCTGAGGAGCCCCCAGGGGACAACGTGGAGCCAGTGCCCCTCGAGTTCAGGGGGAAAGAGGCTATCAG
Seq C2 exon
ACTCCACAATATTAAAAAAACATACAAAAAGAAAGACAAGAAGACAGAAGCCTTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'8-10,'8-8,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.466 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTTGGAAAGATATGGAATAGGT
R:
TCTCAAGGCTTCTGTCTTCTTGT
Band lengths:
202-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]