MmuEX6090789 @ mm10
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109953498-109973818:-
Coord C1 exon
chr11:109973671-109973818
Coord A exon
chr11:109971685-109971853
Coord C2 exon
chr11:109953498-109953631
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCATCTCTTGGGTCTCCAGATG
3' ss Score
8.47
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCTTACGTGTGGATTATGATTTAAATTCTAATGCACCCCCTGATCCAGCCAGTGGCTCAAATCTGATTATAGCAACCAATTTCATGCTGGTATTTGATGCGTTTTTGTATCTGGCCCTGATGATGTACTTCGAAAAAGTTCTGCCAA
Seq A exon
ATGAATACGGACATCAGCACTCTCCCCTGTTTTTCCTGAAATCTTCATTTTGGCTACAAACACGAAAGCCTGCTCATGTGATTCTTGAAGATGGAATAGACCCCGTTCCTTCATCAGGTGACTCGTTTGAACCGGTGTCCCCAGAATTCCACGGGAAAGAATCCATCAG
Seq C2 exon
AGGCAAGCATTGACGACTTTATCCATTCTGTGGAACGCCAGAACATAGCTTTGGAAGTCGATGCTTCTGGAACCAGAGATGGTACAGATGACCCATCCTACAATGGAGCCCTTATAGTGTCTGGCAATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620_MULTIEX3-1/24=C1-13
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.044
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(11.2=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAATGCACCCCCTGATCCA
R:
GCCAGACACTATAAGGGCTCC
Band lengths:
246-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types