RnoEX0004934 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98281262-98285572:-
Coord C1 exon
chr10:98285425-98285572
Coord A exon
chr10:98283456-98283624
Coord C2 exon
chr10:98281262-98281320
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCATCTCTCGGGTCTGTAGATG
3' ss Score
7.24
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCTTACGCGTGGACTATGATTTAAATTCTAACGCACCCCCTGATCCAGCTGGTAGCTCAAATCTGATTGCAGCAACCAATTTCATGCTGGCATTTGATGCGCTTTTGTATCTGGCCCTGACGATGTACTTTGAAAAAGTTCTGCCAA
Seq A exon
ATGAGTATGGACACCAGCGGTCTCCCCTGTTTTTCCTGAAACCCTCATTTTGGGTACAACCACGAAAGCCTGCTCACGTGATTCTTGAAGATGGAATAGATCCCGCTCCTTTATCAGGTGGCTCGTTTGAACCGGTGTCCCCAGAATTCCACGGGAAAGAATCCATCAG
Seq C2 exon
AATCAGAAATATTTCAAAAGAATACAAAGGAAAGCCCAGTAAAATAGAAGCCTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'12-15,'12-14,14-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTACGCGTGGACTATGAT
R:
TCAAGGCTTCTATTTTACTGGGCT
Band lengths:
204-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]