RnoINT0010374 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12748814-12749119:-
Coord C1 exon
chr7:12749087-12749119
Coord A exon
chr7:12748992-12749086
Coord C2 exon
chr7:12748814-12748991
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TACCCCAAACCATTTCCCAGATA
3' ss Score
3.83
Exon sequences
Seq C1 exon
CCTGAAGACCAAGAAGTGGGTGGATGAGGTCAG
Seq A exon
GTGAGCAGGGACCTGGTCTGGGAAACCCCGTCTCTTCCTTTCCACACCCTCTACTTGCCTGCCCACTCCCATCTCTACCCCAAACCATTTCCCAG
Seq C2 exon
ATACGGGGGCTTCTCCCTGGGAGGCCGAGATCCAGACCTGCCCTCAGGGCGTGAGGTGGTCCGCACAGTGGCAGAGATGCGGGCACTGCTGAGCCCTCAACCTGGCAATACACTAGATCGTATCCTGAACAACCTCACTCAGTGGGCCCTTGGTCTTGACGCCCGGAACAGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(14.9=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTGGGTGGATGAGGTCA
R:
GCCCACTGAGTGAGGTTGTTC
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]