RnoINT0010431 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98286155-98287001:-
Coord C1 exon
chr10:98286860-98287001
Coord A exon
chr10:98286341-98286859
Coord C2 exon
chr10:98286155-98286340
Length
519 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGGCTCTGCTCTCATTCCAGATC
3' ss Score
9.65
Exon sequences
Seq C1 exon
GCTATCCTGGGGTCTGCTCTATGCTGGCTTTGTCTTCGTGATGGCCCTATCCCTGGCACTTGTTATCAAGTCTGTCCAGTTTCTTATTCTGACCAGCTTCACGGTGGTCTTTAGCCTCTTCCTCCTGTACGGATTGTCTATG
Seq A exon
GTGAGTTGATTTAAAATTCCCCTTGCCCATCTCTTACCCCAAGAATGAAGCATTGTTTCGAAGAGGTCACTATCTTATGTGTGGCAGGCTTTCTAGCCTCTGTTTGCATACGAAACTCCAGAGACAGGCATGCTTTTGTGTACTGTGTAGCACAATTTGCAAGACATAGTTTTGTGTATTTAAATGCTAGATCCCTTCTGTGTCTTATGGGCGGGGTCTCCGCCAAGTTCACAATGTCGCCATAATCCCTTTTGGTCCCGTAGCACCCTAGCTTCCGGAATTGTCGGGAATTCCACAAGGTATAATGAAGTTAAATCTTTTGAGTGTCTGTCCAATGCTTTCTGACCCTTGACAGAATAATCAGGATCGACGACGTCGCCACCGGCTACAAAGACTGCGACATCAGCACCACCACTCACCACCACCACCATCATCATCATCATCATCATCATCATCATCATCATCACTACCATGTTATATTAGATAAATATTATCCACCTGGCTCTGCTCTCATTCCAG
Seq C2 exon
ATCTCTTTGGCCTTCCTAATGAGCGTCTTGGTGAGGAAGTCTGTCCTCACTGGCCTGACTGTGTTCCTTCTCACCATCTTCTGGGGAAGCCTCGGTTTCACAGCCCTGTACAGATATCTCCCTGCACCTTTGGAATGGACTCTCAGTCTTTTTAGCCCCTTCGCCTTCACACTAGGAATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100),PF0308311=MtN3_slv=PD(45.8=79.2)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCCTGGGGTCTGCTCTA
R:
GGGCCATTCCTAGTGTGAAGG
Band lengths:
326-845
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]