GgaINT0129137 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8199668-8200343:-
Coord C1 exon
chr18:8200205-8200343
Coord A exon
chr18:8199854-8200204
Coord C2 exon
chr18:8199668-8199853
Length
351 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
GGATGCTTCTGTTCTTACAGGTC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GCTCTCCTGGAGCCTGCTGTATGCCATCTACGTGCTGGTCCTGTCCTGCCCGCTGACTGCCCTGGTGATGAACGAGACTTTCCACAACAGCAGCTTCTCTGCCATCCTAATGCTGTTTTTCCTGTATGGCCTTGCATGT
Seq A exon
GTAAGTCGGATTTGAGAGACAGATTTTCTCACTGCATGGTTTGTTGATGTTTTGATGAGCATAAACATTGCTCCAGAGGCATGAGCACAGCACTGTCGTCAGGGTTGTATTTGTGTTTGGTCACATGAAGTGAAAAAGCTGAGTGGGTTCCCTGCTTCAGTGAGTGGTTTGAGTTGTAGGCTGGCTATAGAAGACCTGATTGAAACTCAGGTCTACTCACTGAAAAAGGACTGTTATACTTTATTACACAGACCCAACTCACCAGAGACCCATTTGCCTGGCAAGTGGCAATACTGCTGGTTAAGGATACTTATCTCCTCCAGAGCTTGAAGGATGCTTCTGTTCTTACAG
Seq C2 exon
GTCCACCTGGTCTTCATGCTCTGCTCCCTCCTGAGAACATCCAAACTTGTGGGCTCCCTGGGATTCCTCATCACCTTTCTCTTTGGCTGCCTGAGCCTCTCAGTGCTGATAGAAAAGCTTCCAGAACCTTTGCAGTGGTTTCTCAGCCTCTTTTGTCCTTTTGCATTCAATGTTGGCATTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTGGAGCCTGCTGTAT
R:
AATGCCAACATTGAATGCAAAAGGA
Band lengths:
318-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]