RnoINT0020255 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12732851-12733814:-
Coord C1 exon
chr7:12733626-12733814
Coord A exon
chr7:12732989-12733625
Coord C2 exon
chr7:12732851-12732988
Length
637 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
3' ss Seq
CCCCTAACCCAATGCTTTAGGCC
3' ss Score
5.44
Exon sequences
Seq C1 exon
CAAGAGGCAGAGGCCAACCTGCGCAAGGCTAAACAGGGCTACAAACAACGTTGTGAAGACCACGACAAGGCCCGGCTCCAGGTGGCCAAGGCTGAGGAGGAACAACAGGGCACAGGGCCAGGAGCAGGGACTGCAGCCTCCAAGGCCCTGGACAAGAGGCGGAGGCTGGAGGAAGAGGCCAAAAACAAG
Seq A exon
GTGCATTAGCTGGAGGGGCCCCAAGGACTCCTGGAAACGTGTTTCCAGGGGACATGTGTGTATTTGCCACCTCCAGGCCTGTGTCACCTCCACCACCTATGCCAGATCCCCTTTGCTGTTTCTTTAATTTTTGGCTGTACTAAGAGCGGATCTCTAGGTCTTTCTCCATACAGCCCTTAAGAACAAGGGCTCCACCCTGACCACGCCCCCAACCCCTCACTGGTGGATTCCAGCAGAGTCTACCCTGGCCACGCCCCCAATCCCTCACCGGGGGGGGGGGGGGCTTCTAGGCAGATGCTCCACTTCTGACCACCCCCCCAACCTCTCACTGGGGGATTCCAGGAGAGTCCACCCTGGCCACACCCCCAGTCCCTCACTGGGGGATTCTAGGTAGATGCTCCACTCCTGACCACGCCCCCAGCCCCCTCAGTGGGGGATTCTAGGAAGGGCTCCACTCCTGAGCCTTACCCTTGGCCCACTTCTTATATTTTATCTAGAGATAGTCTGCCTAAATTTCCCAGGCTTTTGCTCAGGGTCTCTAGTTACTGTGGTGACAGTTCTGCCCACCATAATGGTCTCTCCTGGATTTCTATGTCAATACGGTCAACTGACCCTTTCCCCTAACCCAATGCTTTAG
Seq C2 exon
GCCGAGGAGGCCATGGCCACTTACCGCACATGCGTGGCAGATGCAAAGACACAGAAGCAAGAGCTGGAGGACACAAAGGTGACTGCGCTGCGACAGATCCAGGAGGTCATCAGACAGAGTGATCAGACCATTAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGCAAGGCTAAACAGG
R:
CGACTTAATGGTCTGATCACTCTGT
Band lengths:
310-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]