RnoINT0024796 @ rn6
Intron Retention
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2539920-2540507:+
Coord C1 exon
chr7:2539920-2540135
Coord A exon
chr7:2540136-2540252
Coord C2 exon
chr7:2540253-2540507
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
ATGTGCTTTTCTCTCTCCAGCCC
3' ss Score
10.75
Exon sequences
Seq C1 exon
GCTGAGAAAGAGAAGATGAAGACAAAGCAGGAGAAGCTGAAGGAAAAGGTGAAGAGGGAAAAGAAAGAAAAGGTAAAAGTGAAGGGAAAGGAAGAGCCCAGAGCCAGGCCATCCTGTAGAGCTACACAGAGGCGACTGGAGGAGCGGCAGAGGCAGCAGGTCATCTTGGAGGAGATGAAGAAGCCCACGGAGGATATGTGTCTGGCTGACCACCAG
Seq A exon
GTATTAAGGGTCATGGAAGGGCCAGTTGTGAGGACGTTTCTATTACCAGAAGGACAATATCTAGATAGTGCCTCCTGGTAAGTCAAACAGGATATCCATGTGCTTTTCTCTCTCCAG
Seq C2 exon
CCCCTGCCTGACTTCACACGCATCCCTGGTTTGACACTGTCCAGCAGGGCTTTCTCAGATTGCTTGACCATCGTGGAGTTCCTGCACAGTTTTGGCAAAGTGCTAGGCTTTGACCTTACCAAAGATGTTCCTAGTCTCGGAGTCCTGCAGGAGGGGCTCTTATGTCAAGGTGACAGCTTGGACAAAGTGCAGGACCTGCTGGTCCGGCTCCTGAAGGCTGCACTTCACGATCCTGGTTTGCCCTCCTACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881:ENSRNOT00000079383:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTGTCTGGCTGACCACCA
R:
ATCGTGAAGTGCAGCCTTCAG
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]