MmuINT0024113 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127556326-127556934:+
Coord C1 exon
chr10:127556326-127556556
Coord A exon
chr10:127556557-127556679
Coord C2 exon
chr10:127556680-127556934
Length
123 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
ATGCGCTTTTCTCTCCCCAGCCC
3' ss Score
10.03
Exon sequences
Seq C1 exon
GCTGAGAAAGAGAAGATGAAGACAAAGCAGGAAAAGCTGAAGGAAAAGGTAAAGCGAGAAAAGAAAGAAAAGGTAAAAGCGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGAGATGAAGAAGCCCACAGAGGATATGTGTCTGTCTGACCACCAG
Seq A exon
GTATTAAGGGTCATGGAAGGGCCAGTGCTGAGGACATTTCTCGTGTTACCAGAAGGACTTGTGAATTCTAGACAGTGCCTCTTGTGAGTCTAACAAGATACCCATGCGCTTTTCTCTCCCCAG
Seq C2 exon
CCCCTGCCTGACTTCACACGCATCCCTGGTTTGACACTGTCCAGTAGGGCTTTCTCAGATTGCTTGACCATCGTGGAGTTCCTTCACAGTTTTGGCAAAGTGCTAGGCTTTGACCTTACCAAAGATGTTCCTAGTCTAGGAGTCCTGCAGGAGGGACTCTTATGTCAAGGTGACAGCTTGGACAAAGTGCAGGACCTGCTGGTGCGACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCCCCCCTACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGATGAAGAAGCCCA
R:
TCCTGCACTTTGTCCAAGCTG
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: