DreINT0036834 @ danRer10
Intron Retention
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6770745-6773438:-
Coord C1 exon
chr23:6773058-6773438
Coord A exon
chr23:6771000-6773057
Coord C2 exon
chr23:6770745-6770999
Length
2058 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
GTCTCTCTCCCTCTTTGTAGCCT
3' ss Score
10.59
Exon sequences
Seq C1 exon
TTGGAGAAATCCAAAGAGCAGGGACTGGATAATGGGGACCTCTCACTGCCATTCAGCCAGTCGTCTGAAAGCACCCTGTCGGCTTCAGAGGGGCCCAAGAAGCCCGGGCGCAGGAGGAAGGTTGTAGTACCTGCAGCAGAAACCTTCGACCCGGAGCAGGCCAGCCCAATCAAAACTGTGGCCCGAGCCCGCAGCAAGGCTAAGGCTTTGGCAAAGGCCCAGGCACAAGCGGAGGCAGAGGCACGGGCTGCACTGGCGGCAAAGAGAGCGGCGGAGAGGAGAGCACAGGCTCAGAGACGTATGGAGGAGAGGAAGAAACAGCAGATGCTCTTAGAGGAGATGAAGAAGCCTGCAGAGGACATGTGTCTACCCGACCACACG
Seq A exon
GTGAGCGATGTAGAATTTGCATTACACAAATTCATGAAGATTACTTTTAAACCTTCTAAACTTCAACGCAAATGTTTCTAATCAAAATACCAATTCGGCAGAACAGCATGTGGGTATTAAATGTTTAAAGGTGTCATTTGATGCTCATGCCCAAGTCTATAACACTTTCGAAACTCAAATGTCTTAATGATAGTGGAAATTTTACCTTGTAAAAAACAGTTTAGTTCGCAGCAACCTGTTTTTGAGCATGTCTCTTTAAATGATAACGAGCTGCTGCTCTTTGACCCTGCATCTTTTTTTAAAGCTGAAGTGCATCAGAGATTTTTGACACAAATTGAATACAAATTTTTAGCATAATGGACACACATAACACATTTTGCTGAGTCTTCGCCACTGCTTTTTATCTGTCATGACTGAGTATTTGAAGCTTTTTCCACAATATGTTGACAAATCTAATATTACTCTGGTGCATCTTGCATGGATATAATCATTTATTATTACTTGACATTGCAGCCTACCATTATCAGTTTAAAATCTTATCAAAGAGTCAGAAATTCAAAAAGTGACATGAAAAGTGGCTGAAATGAAGTAATCAACTGCATCATCCAACTTTTTTTTTTTGGTGATCTTTCCTTTCAAATTTTCCCTTTAGATTTAATTGCAATTTTAAGTCCAGCTTCATATTTCCAAGGTTTGAAAAGTGGAAAAAAGCGGAACAATGTGAGTTTTTCAGATGGATGCAAGTTTTTGAACAATGTCTGTGAAAATCCCTACATATATTAAATAAGCCATTTCACCATTGTCTCTTTTGAAGTTGGGATTCTGCAAGCCTGTACATTCGAACACCCAGCATGATTGAGGTGGGAACCATAATTTACTGGAAGGCGGTCACATTGAAAGAACTAAAATTAGCTGGTTGTTTGCGTCAAACCAGATTGAAACTGCTGGTTTCGCATGATGACACATTTTAATACTTTAGACCAACTCCTAACAGTTTTTCTGGACTGAGCGACACTGCAGAAACCTAGCTGAATGCAAATAAAAGAAAACAAATTTTCCCTAATTTTTTTCCCCAAATTTTATGGCAACAATAATTAATCTTTTGCGGCGTAAAAAAGATCTAAACAGAATAAATCTGCTTATATAAAACTTGTAGTAGCAGTGCTCATAAGGTGCGACTAAATTTTGTCTGGTGCGCCTAAAATTTTAAAGTTTGGAGCACCTGTGCTACCAAGCAAAAAGGTCAATTTTGAGCTCTATATTCCAAATCAACAATGGTTTTTCTTTTTTCTTTTCTTTTTTTTATTGAAAGAAAAACAAGGTGAATTGTTACATACAAGGATTTGACGACTTTTTCTTTTTTTTTTTTATACATTTTTCCCCCCATGAACAACCTCCCTCCCCTTCTAAAAGAAAAATAAATAAATAAACAAATTATAAAAAATTTATAATATAATAATAATAATAGTAACAAAAAAATACTAAATTAAATAAAATTTTTACTGAGTCACAGAGTTTTTATAGCACAATGAGGAAATATTTAACAGTAATGTTTTCCCATCGAGATTCATTGCGTTATCCTTATAAGCATAGACCTCTATAACATTAGGTTGGGGGGGGTGGATGGGGGGTGGGATGGGGGTGGGGGGAGGAGTGTTAGACCTTTTTCAAACTATGAAGTCATTGGATTTCATACTGTATAAAAATGTTTAATAGATCCTCTAAGAGAGTATTTAATTTTCTCCAATCTTAAAAACAGCATCATATCACTAAACCAGAGTGAAACTGAAGGTGGTTCACTTGATTTCCAATTAAGCAATATTCTTCTCCGAGCCATAAGACATGCAAACAGTGATTTTTCTACATTAGCCATTCCGTAACCATAATTTTTAGTAGTAAAACAGTGTTTATACAAATTGTAAACAATGTGCCAAAGAAAATAGTTACAACACTTTTACTATTAATATAACAATAGTTCATTTTCATTTGTGAATGTAAAGTTTGTCTCTGTGTTATTCTGTCACTCAGTGTGTTTGTGGTCTCTCTCCCTCTTTGTAG
Seq C2 exon
CCTCTGCCTCCACTAACACGGATACCAGGACTGAAGCTCTCGGGTTTGGCTTTCTCTAATTGTTTACGGGTGGTTGAGTTCCTCCATGGCTATGGCAAGATTCTGGGACTTCAGGTGCCCAAGGACATCCCCAGTCTTATTACCCTGCAGGAGGGGCTTCTGGGCATGGAAAAGAGCCAGGGTGAACTGCTGGATCTGCTCATCAAACTGGTGGAGTCCGCGCTGCATGATCCTGGACTGCCCTCGTATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974:ENSDART00000157828:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]