HsaINT0016794 @ hg38
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56605073-56606063:-
Coord C1 exon
chr12:56605830-56606063
Coord A exon
chr12:56605328-56605829
Coord C2 exon
chr12:56605073-56605327
Length
502 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
ACTCACTTTTCTCTCTCTAGCCC
3' ss Score
9.72
Exon sequences
Seq C1 exon
GCTGAGAAAGAAAAAGGAAAGACAAAGCAGGAAAAACTGAAGGAAAAAGTCAAGAGGGAAAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGACCAAAGCCAAGCCAGCCTGTAAAGCAGATAAGACCCTGGCCACACAGAGGCGCTTGGAGGAACGGCAGAGGCAGCAGATGATCTTGGAGGAAATGAAGAAGCCGACAGAGGATATGTGTCTGACTGACCACCAG
Seq A exon
GTAGTGAGGAGAGAGTAACAGTTCCTGGGTCAGCTGGGAAGACTTTCCTTTAAAAAAAAAAAAAGGACTTCTGCAATGGGAGAGACATTTCCATTAAAGATTAAAGGAAGGCCGGGTGCCATGGCTCACACTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCGCTTGAGCCCAGCAGTTCAAGACCAGCCTGGGCAACATGGCGAGACCTCATCTCTACAAAAAATACGAAAATTAGCTGGGTGTGGTGGCATGTACCTGTAGTCCCAGCTATTTGAGAGACTGAGGTGGGAGAATTGCTTGGGCTTAGGAGGTCGAGGCTGCAGTAAGCAGAGATCATGCCACTGCACTCCAGCTTGGGTGACAGAGTGAGACCCTATCTCAAAAAAAAAAAAAAAATTACATAAAAATTAAAGGAAGAACCTCTTGTAGACATGCAAATTGTCATCTTCTGTTATGTTTAACAGAACTCTCTACTCACTTTTCTCTCTCTAG
Seq C2 exon
CCCCTGCCTGACTTCTCACGAGTCCCTGGTCTGACATTGCCCAGTGGAGCCTTCTCAGACTGCTTGACCATTGTGGAGTTCCTGCATAGCTTTGGCAAGGTGCTGGGCTTTGATCCTGCCAAAGATGTGCCTAGCCTGGGGGTCCTGCAGGAGGGACTCCTGTGTCAAGGTGACAGCTTGGGTGAGGTGCAAGACCTGCTGGTCAGGCTGCTGAAGGCTGCACTCCATGATCCTGGCTTTCCCTCCTACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108:ENST00000551812:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAAGACCCTGGCCACACA
R:
GGATCATGGAGTGCAGCCTTC
Band lengths:
342-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development