BtaINT0025055 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57151992-57152615:+
Coord C1 exon
chr5:57151992-57152225
Coord A exon
chr5:57152226-57152360
Coord C2 exon
chr5:57152361-57152615
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
TACCACTTTTATCCCTACAGCCG
3' ss Score
8.81
Exon sequences
Seq C1 exon
GCTGAGAAGGAGAAGGTAAAAACAAAGCAGGAAAAACTGAAGGAAAAAGTCAAGAGGGAGAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGGCCAAGACCAAGCCAACGGGTAAAGCAGATAAAGTGCTGGCCACACAGAGGCGCTTGGAGGAGCGGCAGAGGCAGCAGATGATCTTGGAGGAGATGAAGAAGCCCACAGAGGACATGTGTCTGACTGACCACCAG
Seq A exon
GTAGTGAGGGGAGAACAGCAGGTCCTGGAGGGGCCGCCCGTGAAGACACTTCTGTTACAGGAGGAGCCTCCTAGATACCCAGACTGTTGCCTTCCCATGTGTTTGACAGAACACCTACCACTTTTATCCCTACAG
Seq C2 exon
CCGCTGCCTGACTTCTCACGCATCCCTGGTCTGATCCTGCCTAGTGGGGCCTTCTCAGACTGCTTGACCATTGTGGAGTTCCTGCACAGCTTCGGCAAGGTGCTGGGCTTTGACCCTGCCAAAGATGTCCCTAGTCTGGGGGTCCTGCAGGAGGGGCTCCTGTGTCAAGGCGACAGCTTGGGCGAGGTGCAGGATCTCCTGGTGCGACTCCTGAGAGCAGCTCTCTGTGACCCTGGCCTGCCCTCCTATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0449910=SAPS=FE(34.4=100)
A:
NA
C2:
PF0449910=SAPS=PD(29.9=78.8),PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCAACGGGTAAAGCAGA
R:
ATCTTTGGCAGGGTCAAAGCC
Band lengths:
253-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]