HsaINT0016794 @ hg19
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:56998857-56999847:-
Coord C1 exon
chr12:56999614-56999847
Coord A exon
chr12:56999112-56999613
Coord C2 exon
chr12:56998857-56999111
Length
502 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
ACTCACTTTTCTCTCTCTAGCCC
3' ss Score
9.72
Exon sequences
Seq C1 exon
GCTGAGAAAGAAAAAGGAAAGACAAAGCAGGAAAAACTGAAGGAAAAAGTCAAGAGGGAAAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGACCAAAGCCAAGCCAGCCTGTAAAGCAGATAAGACCCTGGCCACACAGAGGCGCTTGGAGGAACGGCAGAGGCAGCAGATGATCTTGGAGGAAATGAAGAAGCCGACAGAGGATATGTGTCTGACTGACCACCAG
Seq A exon
GTAGTGAGGAGAGAGTAACAGTTCCTGGGTCAGCTGGGAAGACTTTCCTTTAAAAAAAAAAAAAGGACTTCTGCAATGGGAGAGACATTTCCATTAAAGATTAAAGGAAGGCCGGGTGCCATGGCTCACACTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCGCTTGAGCCCAGCAGTTCAAGACCAGCCTGGGCAACATGGCGAGACCTCATCTCTACAAAAAATACGAAAATTAGCTGGGTGTGGTGGCATGTACCTGTAGTCCCAGCTATTTGAGAGACTGAGGTGGGAGAATTGCTTGGGCTTAGGAGGTCGAGGCTGCAGTAAGCAGAGATCATGCCACTGCACTCCAGCTTGGGTGACAGAGTGAGACCCTATCTCAAAAAAAAAAAAAAAATTACATAAAAATTAAAGGAAGAACCTCTTGTAGACATGCAAATTGTCATCTTCTGTTATGTTTAACAGAACTCTCTACTCACTTTTCTCTCTCTAG
Seq C2 exon
CCCCTGCCTGACTTCTCACGAGTCCCTGGTCTGACATTGCCCAGTGGAGCCTTCTCAGACTGCTTGACCATTGTGGAGTTCCTGCATAGCTTTGGCAAGGTGCTGGGCTTTGATCCTGCCAAAGATGTGCCTAGCCTGGGGGTCCTGCAGGAGGGACTCCTGTGTCAAGGTGACAGCTTGGGTGAGGTGCAAGACCTGCTGGTCAGGCTGCTGAAGGCTGCACTCCATGATCCTGGCTTTCCCTCCTACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-BAZ2A:NM_013449:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0449910=SAPS=FE(33.8=100)
A:
NA
C2:
PF0449910=SAPS=PD(31.1=83.5),PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAAGACCCTGGCCACACA
R:
GGATCATGGAGTGCAGCCTTC
Band lengths:
342-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)